This function calls fslreorient2std
fslreorient2std(
file,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
verbose = TRUE,
opts = "",
...
)fslreorient2std_mat(
file,
matfile = tempfile(fileext = ".mat"),
verbose = TRUE,
...
)
If retimg
then object of class nifti. Otherwise,
Result from system command, depends if intern is TRUE or FALSE.
(character) image to be manipulated
(logical) return image of class nifti
(logical) If retimg
, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(logical) print out command before running
additional options to pass to fslreorient2std
additional arguments passed to readnii
.
Output file for the matrix for reorientation