This function calls slicetimer
and performs
slice timing correction for fMRI data
fslslicetimer(
file,
outfile = NULL,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
tr = 3,
direction = "z",
indexing = c("up", "down"),
acq_order = c("contiguous", "interleaved"),
verbose = TRUE,
...
)fsl_slicetimer(..., outfile = tempfile(fileext = ".nii.gz"), retimg = FALSE)
If retimg
then object of class nifti. Otherwise,
Result from system command, depends if intern is TRUE or FALSE.
(character) image to be manipulated
(character) resultant image name (optional)
(logical) return image of class nifti
(logical) If retimg, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(numeric) Repeat time in seconds
(character) Direction of acquisition
(character) Whether indexing was bottom up (default) or
down using --down
option
(character) Order of acquisition, either contiguous or interleaved
(logical) print out command before running
additional arguments passed to readnii
.