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fslr (version 2.25.3)

get_quickshear_mask: Face Removal Mask using "Quickshear Defacing for Neuroimages" (Schimke et al. 2011)

Description

Face Removal Mask using "Quickshear Defacing for Neuroimages" (Schimke et al. 2011)

Usage

get_quickshear_mask(brain_mask, buffer = 10, verbose = TRUE)

quickshear_deface_image( file, brain_mask = NULL, buffer = 10, verbose = TRUE, ... )

Value

A binary image of the non-face areas

Arguments

brain_mask

Brain mask image. If NULL, then fslbet will be run

buffer

buffer to add to intercept for face mask equation

verbose

print diagnostic messages

file

input image - same orientation as brain mask

...

additional arguments passed to fslmask

Examples

Run this code
# \donttest{
if (have_fsl()) {
   file = "~/Downloads/sample_T1_input.nii.gz"
   if (file.exists(file)) {
       res = quickshear_deface_image(file)
       brain_mask = fslbet(file) > 0
       mask = get_quickshear_mask(brain_mask)
       image = fslmask(file, mask)
   }
}
# }

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