This function calls mcflirt
mcflirt(
file,
outfile = NULL,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
opts = "",
verbose = TRUE,
...
)
If retimg
then object of class nifti. Otherwise,
it will have additional attributes in the additional_files
field.
(character) image to be manipulated
(character) resultant image name (optional)
(logical) return image of class nifti
(logical) If retimg
, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(character) operations to be passed to mcflirt
. Cannot use
-o
or -verbose
, as output file should be specified in outfile
.
(logical) print out command before running
additional arguments passed to readnii
.