melodic

This function calls <code>melodic</code>

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

melodic function

<dl><dt>file</dt>
<dd>(character) image to be run</dd>
<dt>outdir</dt>
<dd>(character) output directory. 
(Default <code>dirname(file)</code>)</dd>
<dt>intern</dt>
<dd>(logical) pass to <code><a href="/link/system?package=fslr&version=2.25.3" data-mini-rdoc="fslr::system">system</a></code></dd>
<dt>opts</dt>
<dd>(character) options for melodic</dd>
<dt>verbose</dt>
<dd>(logical) print out command before running</dd>
<dt>...</dt>
<dd>arguments passed to <code>checkimg</code></dd></dl>

Arguments

Run MELODIC ICA — melodic

<dl>

<dt>file</dt>
<dd>(character) image to be run</dd>


<dt>outdir</dt>
<dd>(character) output directory. 
(Default <code>dirname(file)</code>)</dd>


<dt>intern</dt>
<dd>(logical) pass to <code><a href='https://rdrr.io/r/base/system.html'>system</a></code></dd>


<dt>opts</dt>
<dd>(character) options for melodic</dd>


<dt>verbose</dt>
<dd>(logical) print out command before running</dd>


<dt>...</dt>
<dd>arguments passed to <code>checkimg</code></dd>

</dl>

melodic: Run MELODIC ICA

Description

Usage

Value

Arguments