mid_sagittal_align

This function takes in an image, flips the image over the
left/right plane, registers that flipped image to the original image,
then applies the half transformation

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

mid_sagittal_align function

<dl><dt>file</dt>
<dd>(character) input filename or class nifti</dd>
<dt>outfile</dt>
<dd>(character) output filename</dd>
<dt>retimg</dt>
<dd>(logical) return image of class nifti</dd>
<dt>opts</dt>
<dd>(character) options passed to <code>flirt</code></dd>
<dt>translation</dt>
<dd>(logical) should the translation parameters be
preserved (TRUE) or set to zero (FALSE)</dd>
<dt>force_rpi</dt>
<dd>Should <code>rpi_orient_file</code> be
run?</dd>
<dt>verbose</dt>
<dd>(logical) print diagnostic messages</dd></dl>

Arguments

Mid-Sagittal Plane Alignment — mid_sagittal_align

<dl>

<dt>file</dt>
<dd>(character) input filename or class nifti</dd>


<dt>outfile</dt>
<dd>(character) output filename</dd>


<dt>retimg</dt>
<dd>(logical) return image of class nifti</dd>


<dt>opts</dt>
<dd>(character) options passed to <code>flirt</code></dd>


<dt>translation</dt>
<dd>(logical) should the translation parameters be
preserved (TRUE) or set to zero (FALSE)</dd>


<dt>force_rpi</dt>
<dd>Should <code>rpi_orient_file</code> be
run?</dd>


<dt>verbose</dt>
<dd>(logical) print diagnostic messages</dd>

</dl>

mid_sagittal_align: Mid-Sagittal Plane Alignment

Description

Usage

Value

Arguments