Wrapper for run_first_all
from FSL for FIRST analysis
segmentation of subcortical structures
run_first_all(
img,
oprefix = tempfile(),
brain_extracted = FALSE,
structures = NULL,
affine = NULL,
opts = "",
verbose = TRUE
)
List of results, including result of system
and some output files
specifies the input image (T1-weighted)
specifies the output image basename (extensions will be added to this)
specifies that the input image has been brain extracted
a restricted set of structures to be segmented
specifies the affine registration matrix to standard space (optional)
(character) operations to be passed to run_first_all
(logical) print out command before running