plot_motifs_histo

numeric vector.
The vector contains observed assemblage performances.

fobs

an integer vector of <code>length(fobs)</code>.
The vector contains the labels of each assemblages.
The labels are only used to plot the assemblage performances
that share a same assembly motif
with a same symbol and color.

assMotif

an integer.
It is the number of wished bars of histogram.

nbar

a string. The string is used as graph title.

main

a character equals to <code>"amean"</code> or <code>"gmean"</code>.
Switch to arithmetic formula if <code>opt.mean = "amean"</code>.
Switch to geometric formula if <code>opt.mean = "gmean"</code>.

opt.mean

Plot the histogram of performances of all assemblage,
and the density curves of performances sorted by assembly motif

internal

Cluster together the components that make up an interactive
system on the basis of their functional redundancy
for one or more collective, systemic performances.
Plot the hierarchical tree of component clusters,
the modelled and predicted performances of component assemblages,
and other results associated with a functional clustering.
Test and prioritize the significance of the different components
that make up the interactive system,
of the different assemblages of components that make up the dataset,
and of the different performances observed on the component assemblages.
The method finds application in ecology, for instance,
where the system is an ecosystem, the components are organisms or species,
and the systemic performance is the production of biomass
or the respiration of the ecosystem.
The method is extensively described in
Jaillard B, Deleporte P, Loreau M, Violle C (2018)
"A combinatorial analysis using observational data identifies species
that govern ecosystem functioning"
<doi:10.1371/journal.pone.0201135>.

plot_motifs_histo: Plot histogram of assemblage performances by assembly motif

Description

Usage

Arguments

Value

Details