plot_motifs_infos

the result of a functional clustering
obtained using the function <code><a rd-options="" href="/link/fclust?package=functClust&version=0.1.6" data-mini-rdoc="functClust::fclust">fclust</a></code>.

a string,
that specifies the way for sorting the motifs.
It can be <code>"performance"</code> or <code>"name"</code>,
indicating a sorting by motif performances,
or a sorting by motif names.

opt.sort

Plot two reference graphs for checking
that plot of sorted data are right:
 the non-sorted assembly motifs
 and assembly motifs sorted by decreasing mean observed performances.

internal

Cluster together the components that make up an interactive
system on the basis of their functional redundancy
for one or more collective, systemic performances.
Plot the hierarchical tree of component clusters,
the modelled and predicted performances of component assemblages,
and other results associated with a functional clustering.
Test and prioritize the significance of the different components
that make up the interactive system,
of the different assemblages of components that make up the dataset,
and of the different performances observed on the component assemblages.
The method finds application in ecology, for instance,
where the system is an ecosystem, the components are organisms or species,
and the systemic performance is the production of biomass
or the respiration of the ecosystem.
The method is extensively described in
Jaillard B, Deleporte P, Loreau M, Violle C (2018)
"A combinatorial analysis using observational data identifies species
that govern ecosystem functioning"
<doi:10.1371/journal.pone.0201135>.

Beno<c3><ae>t Jaillard

functClust

Functional Clustering of Redundant Components of a System

Philippe Deleporte

Michel Loreau

Cyrille Violle

plot_motifs_infos function

the result of a functional clustering
obtained using the function <code><a rd-options='' href='fclust'>fclust</a></code>.

plot_motifs_infos: Plot reference graphs for checking that plot of sorted data are right

Description

Usage

Arguments

Value

Details