Calculates the root mean squared deviation of matrices A and B. If these
matrices are symmetric (Symmetric = TRUE) then the calculation is based on
the upper triangles of each matrix. When the matrices are symmetric, the
diagonal of each matrix can be included or excluded from the calculation
(IncludeDiag = FALSE)
Usage
rmsd(A, B, Symmetric = TRUE, IncludeDiag = FALSE)
Value
Returns the root mean squared deviation of (A - B).
Arguments
A
A possibly non square matrix.
B
A matrix of the same dimensions as matrix A.
Symmetric
Logical indicating whether A and B are symmetric matrices.
(Default: Symmetric = TRUE)
IncludeDiag
Logical indicating whether to include the diagonals in
the calculation. (Default: IncludeDiag = FALSE).