gRbase (version 1.8-6.7)

graph-clique: Get cliques of an undirected graph

Description

Return a list of (maximal) cliques of an undirected graph.

Usage

get_cliques(object)
max_cliqueMAT(amat)
getCliques(object)
maxCliqueMAT(amat)

Arguments

object

An undirected graph represented either as a graphNEL object, an `igraph` object, a (dense) matrix, a (sparse) dgCMatrix

amat

An adjacency matrix.

Value

A list.

Synonymous functions

For backward compatibility with downstream packages we have the following synonymous functions:

* getCliques = get_cliques

* maxCliqueMAT = max_cliqueMAT

Details

In graph theory, a clique is often a complete subset of a graph. A maximal clique is a clique which can not be enlarged. In statistics (and that is the convention we follow here) a clique is usually understood to be a maximal clique.

Finding the cliques of a general graph is an NP complete problem. Finding the cliques of triangualted graph is linear in the number of cliques.

The workhorse is the max_cliqueMAT function which calls the maxClique function in the RBGL package.

See Also

ug, dag, mcs, mcsMAT, rip, ripMAT, moralize, moralizeMAT

Examples

# NOT RUN {
## graphNEL
uG0 <- ug(~a:b + b:c + c:d + d:e + e:f + f:a) # a graphNEL object
get_cliques(uG0)

uG1 <- as(uG0, "igraph")
get_cliques(uG1)

uG2 <- as(uG0, "matrix") 
get_cliques(uG2)

uG3 <- as(uG1, "dgCMatrix") 
get_cliques(uG3)
# }