write_significant_regions


 This function writes into a tab delimited file the significant aberrant regions having the following format:
 Chromosome - Aberration Kind - Region Start [bp] - Region End [bp] - Region Size [bp] - q-value
	Chromosome: The chromosome where the aberration is found
	Aberration Kind: The kind of the aberration found for the region
	Region Start [bp]: The bp starting point of the aberrant region
	Region End [bp]: The bp ending point of the aberrant region
	Region Size [bp]: The size of the region in terms of bp
	q-value: The q-value assessed for the aberrant region

This package allows to assess the statistical significance
of chromosomal aberrations.

S Morganella

gaia

GAIA: An R package for genomic analysis of significant
chromosomal aberrations.

write_significant_regions function

This function writes into a tab delimited file the significant aberrant regions having the following format:Chromosome - Aberration Kind - Region Start [bp] - Region End [bp] - Region Size [bp] - q-valueChromosome: The chromosome where the aberration is foundAberration Kind: The kind of the aberration found for the regionRegion Start [bp]: The bp starting point of the aberrant regionRegion End [bp]: The bp ending point of the aberrant regionRegion Size [bp]: The size of the region in terms of bpq-value: The q-value assessed for the aberrant region

write_significant_regions: This function writes into a tab delimited file the significant aberrant regions.

Description

Arguments

Value