galah (version 1.4.0)

show_all_ranks: Find valid taxonomic ranks

Description

Return taxonomic ranks recognised by the ALA.

Usage

show_all_ranks()

Value

An object of class tbl_df and data.frame (aka a tibble) of available ranks

Examples

Show a listing of all taxonomic ranks

show_all_ranks()
#> # A tibble: 69 x 2
#>      id name        
#>   <int> <chr>       
#> 1     1 root        
#> 2     2 superkingdom
#> 3     3 kingdom     
#> 4     4 subkingdom  
#> # ... with 65 more rows

Use ranks with galah_down_to() and atlas_taxonomy() to get taxonomic trees

galah_call() %>%
  galah_identify("fungi") %>%
  galah_down_to(subphylum) %>%
  atlas_taxonomy()
#>                        levelName
#> 1  Fungi                        
#> 2   <U+00A6>--Ascomycota               
#> 3   <U+00A6>   <U+00A6>--Pezizomycotina       
#> 4   <U+00A6>   <U+00A6>--Saccharomycotina     
#> 5   <U+00A6>   <U+00B0>--Taphrinomycotina     
#> 6   <U+00A6>--Basidiomycota            
#> 7   <U+00A6>   <U+00A6>--Agaricomycotina      
#> 8   <U+00A6>   <U+00A6>--Pucciniomycotina     
#> 9   <U+00A6>   <U+00A6>--Ustilaginomycotina   
#> 10  <U+00A6>   <U+00B0>--Wallemiomycotina     
#> 11  <U+00A6>--Mucoromycota             
#> 12  <U+00A6>   <U+00B0>--Glomeromycotina      
#> 13  <U+00B0>--Zygomycota               
#> 14      <U+00A6>--Entomophthoromycotina
#> 15      <U+00A6>--Kickxellomycotina    
#> 16      <U+00A6>--Mortierellomycotina  
#> 17      <U+00A6>--Mucoromycotina       
#> 18      <U+00B0>--Zoopagomycotina

See Also

This function provides a reference that is useful when specifying the down_to argument of atlas_taxonomy().