deprecated: Deprecated functions

Description

Use galah_identify() instead of select_taxa().

Use galah_select() instead of select_columns().

Use galah_filter() instead of select_filters().

Use galah_geolocate() instead of select_locations().

Use atlas_occurrences() instead of ala_occurrences().

Use atlas_counts() instead of ala_counts().

Use atlas_species() instead of ala_species().

Use atlas_taxonomy() instead of ala_taxonomy().

Use atlas_media() instead of ala_media().

Use atlas_citation() instead of ala_citation().

Use show_all_reasons() instead of find_reasons().

Use show_all_cached_files() instead of find_cached_files().

Use show_all_ranks() instead of find_ranks().

Use show_all_profiles() instead of find_profiles().

Use show_all_atlases() instead of find_atlases().

Use galah_config() instead of ala_config().

Use show_values() instead of search_field_values()

Use show_values() instead of search_profile_attributes()

Usage

select_taxa(query, is_id = FALSE)
select_columns(..., group)
select_filters(..., profile = NULL)
select_locations(query)
ala_occurrences(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  columns = select_columns(group = "basic"),
  mint_doi = FALSE,
  doi = NULL,
  refresh_cache = FALSE
)
ala_counts(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  limit = 100,
  type = c("record", "species"),
  refresh_cache = FALSE
)
ala_species(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  refresh_cache = FALSE
)
ala_taxonomy(taxa, down_to)
ala_media(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  columns = select_columns(group = "basic"),
  download_dir,
  refresh_cache = FALSE
)
ala_citation(data)
find_reasons()
find_cached_files()
find_ranks()
find_profiles()
find_atlases()
ala_config(..., profile_path = NULL)
search_field_values(field)
search_profile_attributes(profile)

Value

All deprecated functions return a tibble.

Arguments

query: A vector of taxonomic names (for select_taxa()) or a valid well-known text string (for select_locations()).
is_id: Logical: Does the information provided in query consist of taxonomic identifiers (TRUE), or taxonomic names (FALSE, the default).
...: Queries consisting of field names (for select_columns()) or equations (for select_filters()).
group: optional; the name of a group of columns to include. See galah_select() for details.
profile: String: The name of a valid ALA profile.
taxa: A tibble created with galah_identify()
filters: A tibble created with galah_filter()
locations: A tibble created with galah_geolocate()
columns: A tibble created with galah_select()
mint_doi: Logical: Should a DOI be created for this download? Defaults to FALSE.
doi: String: Optional ALA DOI to download
refresh_cache: Logical: Should the data be re-downloaded to the cache? Defaults to FALSE.
limit: Integer: How many records should be downloaded? Defaults to 100.
type: String: Should counts be made of the number of "records" (default) or "species"?
down_to: A tibble created with galah_down_to()
download_dir: Path to a directory in which to place media files
data: A tibble returned by ala_occurrences()
profile_path: Optional path to profile information
field: String: A valid field for which to display entries.