Learn R Programming

gamCopula

This R package implements the generalized additive modeling framework for bivariate copulas introduced by Vatter and Chavez-Demoulin (2015) and its extension to Pair-Copula Constructions (or Vine Copulas) by Vatter and Nagler (2017). It includes functions for parameter estimation, model selection, simulation, and visualization. The package is still under development. Please see the API documentation for a detailed description of all functions.

Table of contents


How to install

You can install:

  • the stable release on CRAN:

    install.packages("gamCopula")
  • the latest development version:

    devtools::install_github("tvatter/gamCopula")

Package overview

Below, we list most functions and features you should know about. As usual in copula models, data are assumed to be serially independent and lie in the unit hypercube.

Bivariate copula modeling: the gamBiCop-class

  • gamBiCop: Creates a GAM bivariate copula by specifying a family and model,

namely a gamObject as return by the gam function from the mgcv package. Returns an object of class gamBiCop. The class has the following methods:

 * `print`, `summary`: a brief or comprehensive overview of the bivariate
    copula, respectively. 
        
 * `plot`: plot method based on `plot.gam` from `mgcv`.
 
 * `logLik`, `AIC`, `BIC`, `nobs`: usual fit statistics.
 
 * `EDF`: Equivalent degrees of freedom for the components of the model.
    
  • gamBiCopSimulate: Simulates from a bivariate GAM copula.

  • gamBiCopFit: Estimates parameters of a bivariate copula with a prespecified family. Returns an object of class gamBiCop.

  • gamBiCopSelect: Estimates the parameters of a bivariate copula for a set of families and selects the best fitting model (using either AIC or BIC). Returns an object of class gamBiCop.

  • gamBiCopPredict, gamBiCopPDF, gamBiCopCDF: Predict and PDF/CDF methods for the GAM copula model.

Vine copula modeling: the gamVine-class

  • gamVine: Creates a GAM vine copula model by specifying a tree structure and

list of gamBicop objects corresponding to each edge. Returns an object of class gamVine. The class has the following methods:

* `print`, `summary`: a brief or comprehensive overview of the bivariate
  copula, respectively. 
    
* `plot`: plots based on `plot.gamBiCop`.
  • gamVineSimulate: Simulates from a GAM vine copula model.

  • gamVineSeqFit: Estimates the parameters of a GAM vine copula model with prespecified structure and families.

  • gamVineCopSelect: Estimates the parameters and selects the best family for a GAM vine copula model with prespecified structure matrix.

  • gamVineStructureSelect: Fits a GAM vine copula model assuming no prior knowledge. It selects the R-vine structure using Dissmann et al. (2013)'s method, estimates parameters for various families, and selects the best family for each pair.

  • gamVinePDF: Computes the PDF for a given gamVine object.

  • RVM2GVC: converts an RVineMatrix object from the VineCopula package into a gamVine

Bivariate copula families

In this package several bivariate copula families are included for bivariate and multivariate analysis using vine copulas. It provides functionality of elliptical (Gaussian and Student-t) as well as Archimedean (Clayton, Gumbel, Frank) copulas to cover a large range of dependence patterns. For the Clayton and Gumbel copula families, rotated versions are included to cover negative dependence as well.

A copula family: 1 Gaussian, 2 Student t, 5 Frank, 301 Double Clayton type I (standard and rotated 90 degrees), 302 Double Clayton type II (standard and rotated 270 degrees), 303 Double Clayton type III (survival and rotated 90 degrees), 304 Double Clayton type IV (survival and rotated 270 degrees), 401 Double Gumbel type I (standard and rotated 90 degrees), 402 Double Gumbel type II (standard and rotated 270 degrees), 403 Double Gumbel type III (survival and rotated 90 degrees), 404 Double Gumbel type IV (survival and rotated 270 degrees).

The following table shows the parameter ranges of bivariate copula families with parameters par and par2 and internal coding family:

Copula familyfamilyparpar2
Gaussian1(-1, 1)-
Student t2(-1, 1)(2,Inf)
Double Clayton type I (standard and 90 degrees)301(-Inf, Inf)-
Double Clayton type II (standard and 270 degrees)302(-Inf, Inf)-
Double Clayton type III (survival and 90 degrees)303(-Inf, Inf)-
Double Clayton type IV (survival and 270 degrees)304(-Inf, Inf)-
Double Gumbel type I (standard and 90 degrees)401(-Inf, Inf)-
Double Gumbel type II (standard and 270 degrees)402(-Inf, Inf)-
Double Gumbel type III (survival and 90 degrees)403(-Inf, Inf)-
Double Gumbel type IV (survival and 270 degrees)404(-Inf, Inf)-
Frank5R \ {0}-

References

Vatter, T., Nagler, T. (2017)
Generalized Additive Models for Pair-Copula Constructions.
Preprint available at arXiv:1608.01593.

Vatter, T., Chavez-Demoulin, V. (2015).
Generalized additive models for conditional dependence structures.
Journal of Multivariate Analysis, 141: 147-167, http://dx.doi.org/10.1016/j.jmva.2015.07.003.

Copy Link

Version

Install

install.packages('gamCopula')

Monthly Downloads

193

Version

0.0-7

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Last Published

February 5th, 2020

Functions in gamCopula (0.0-7)

condBiCopSim

Simulation from a Conditional Bivariate Copula
BiCopEta2Par

Copula Parameter of a Bivariate Copula for a Given Value of the Calibration Function
EDF

Equivalent Degrees of Freedom for an Object of the Class gamBiCop
AIC.gamBiCop

Akaike's An Information Criterion for a gamBiCop Object
BIC.gamBiCop

Schwarz's Bayesian Information Criterion for a gamBiCop Object
gamBiCopPredict

Predict method of a Generalized Additive model for the copula parameter or Kendall's tau
RVM2GVC

Transform an Object of the Class R-Vine into an Object of the Class gamVine
gamBiCopSelect

Selection and Maximum penalized likelihood estimation of a Generalized Additive model (gam) for the copula parameter or Kendall's tau.
dim.gamVine

Dimension of an Object of the Class gamVine
formula.gamBiCop

Model Formula of the gamBiCop Object
gamBiCop

Construction of a gamBiCop Class Object
gamVineSeqFit

Sequential maximum penalized likelihood estimation of a GAM-Vine model.
gamBiCopCDF

Conditional distribution function of a Generalized Additive model for the copula parameter or Kendall's tau
BiCopPar2Eta

Calibration Function of a Bivariate Copula for a Given Parameter's Value
gamVineSimulate

gamVine-class

The gamVine Class
gamBiCopSimulate

gamBiCop-class

The gamBiCop Class
gamBiCopFit

Maximum penalized likelihood estimation of a Generalized Additive model for the copula parameter or Kendall's tau.
gamVineStructureSelect

Structure selection and estimation of a GAM-Vine model.
gamVine

Construction of a gamVine Class Object
logLik.gamBiCop

Extract the Log-likelihood from a gamBiCop Object
plot.gamVine

Plot an Object of the Class gamVine
summary.gamBiCop

Summary for a gamBiCop Object
gamBiCopPDF

Conditional density function of a Generalized Additive model for the copula parameter or Kendall's tau
gamVineFamily

Family Matrix of an Object of the Class gamVine
gamVineCopSelect

Sequential pair-copula selection and maximum penalized likelihood estimation of a GAM-Vine model.
gamVinePDF

Conditional density function of a gamVine
gamVineNormalize

Normalize an Object of the Class gamVine
gamCopula-package

Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas
nobs.gamBiCop

Extract the Number of Observations from gamBiCop Object
plot.gamBiCop

Plot a gamBiCop Object
summary.gamVine

Summary for an Object of the Class gamVine