gamCopula (version 0.0-7)

gamBiCopSelect: Selection and Maximum penalized likelihood estimation of a Generalized Additive model (gam) for the copula parameter or Kendall's tau.

Description

This function selects an appropriate bivariate copula family for given bivariate copula data using one of a range of methods. The corresponding parameter estimates are obtained by maximum penalized likelihood estimation, where each Newton-Raphson iteration is reformulated as a generalized ridge regression solved using the mgcv package.

Usage

gamBiCopSelect(
  udata,
  lin.covs = NULL,
  smooth.covs = NULL,
  familyset = NA,
  rotations = TRUE,
  familycrit = "AIC",
  level = 0.05,
  edf = 1.5,
  tau = TRUE,
  method = "FS",
  tol.rel = 0.001,
  n.iters = 10,
  parallel = FALSE,
  verbose = FALSE,
  select.once = TRUE,
  ...
)

Arguments

udata

A matrix or data frame containing the model responses, (u1,u2) in [0,1]x[0,1]

lin.covs

A matrix or data frame containing the parametric (i.e., linear) covariates.

smooth.covs

A matrix or data frame containing the non-parametric (i.e., smooth) covariates.

familyset

(Similar to BiCopSelect from the VineCopula package) Vector of bivariate copula families to select from. If familyset = NA (default), selection among all possible families is performed. Coding of bivariate copula families: 1 Gaussian, 2 Student t, 5 Frank, 301 Double Clayton type I (standard and rotated 90 degrees), 302 Double Clayton type II (standard and rotated 270 degrees), 303 Double Clayton type III (survival and rotated 90 degrees), 304 Double Clayton type IV (survival and rotated 270 degrees), 401 Double Gumbel type I (standard and rotated 90 degrees), 402 Double Gumbel type II (standard and rotated 270 degrees), 403 Double Gumbel type III (survival and rotated 90 degrees), 404 Double Gumbel type IV (survival and rotated 270 degrees).

rotations

If TRUE, all rotations of the families in familyset are included.

familycrit

Character indicating the criterion for bivariate copula selection. Possible choices: familycrit = 'AIC' (default) or 'BIC', as in BiCopSelect from the VineCopula package.

level

Numerical; significance level of the test for removing individual predictors (default: level = 0.05).

edf

Numerical; if the estimated EDF for individual predictors is smaller than edf but the predictor is still significant, then it is set as linear (default: edf = 1.5).

tau

FALSE for a calibration function specified for the Copula parameter or TRUE (default) for a calibration function specified for Kendall's tau.

method

'FS' for Fisher-scoring (default) and 'NR' for Newton-Raphson.

tol.rel

Relative tolerance for 'FS'/'NR' algorithm.

n.iters

Maximal number of iterations for 'FS'/'NR' algorithm.

parallel

TRUE for a parallel estimation across copula families.

verbose

TRUE prints informations during the estimation.

select.once

if TRUE the GAM structure is only selected once, for the family that appears first in familyset.

...

Additional parameters to be passed to gam

Value

gamBiCopFit returns a list consisting of

res

S4 gamBiCop-class object.

method

'FS' for Fisher-scoring and 'NR' for Newton-Raphson.

tol.rel

relative tolerance for 'FS'/'NR' algorithm.

n.iters

maximal number of iterations for 'FS'/'NR' algorithm.

trace

the estimation procedure's trace.

conv

0 if the algorithm converged and 1 otherwise.

See Also

gamBiCop and gamBiCopFit.

Examples

# NOT RUN {
require(copula)
set.seed(0)

## Simulation parameters (sample size, correlation between covariates,
## Student copula with 4 degrees of freedom)
n <- 5e2
rho <- 0.9
fam <- 2
par2 <- 4

## A calibration surface depending on four variables
eta0 <- 1
calib.surf <- list(
  calib.lin <- function(t, Ti = 0, Tf = 1, b = 2) {
    return(-2 + 4 * t)
  },
  calib.quad <- function(t, Ti = 0, Tf = 1, b = 8) {
    Tm <- (Tf - Ti) / 2
    a <- -(b / 3) * (Tf^2 - 3 * Tf * Tm + 3 * Tm^2)
    return(a + b * (t - Tm)^2)
  },
  calib.sin <- function(t, Ti = 0, Tf = 1, b = 1, f = 1) {
    a <- b * (1 - 2 * Tf * pi / (f * Tf * pi +
      cos(2 * f * pi * (Tf - Ti))
      - cos(2 * f * pi * Ti)))
    return((a + b) / 2 + (b - a) * sin(2 * f * pi * (t - Ti)) / 2)
  },
  calib.exp <- function(t, Ti = 0, Tf = 1, b = 2, s = Tf / 8) {
    Tm <- (Tf - Ti) / 2
    a <- (b * s * sqrt(2 * pi) / Tf) * (pnorm(0, Tm, s) - pnorm(Tf, Tm, s))
    return(a + b * exp(-(t - Tm)^2 / (2 * s^2)))
  }
)

## 6-dimensional matrix X of covariates
covariates.distr <- mvdc(normalCopula(rho, dim = 6),
  c("unif"), list(list(min = 0, max = 1)),
  marginsIdentical = TRUE
)
X <- rMvdc(n, covariates.distr)
colnames(X) <- paste("x", 1:6, sep = "")

## U in [0,1]x[0,1] depending on the four first columns of X
U <- condBiCopSim(fam, function(x1, x2, x3, x4) {
  eta0 + sum(mapply(function(f, x)
    f(x), calib.surf, c(x1, x2, x3, x4)))
}, X[, 1:4], par2 = 4, return.par = TRUE)
# }
# NOT RUN {
## Selection using AIC (about 30sec on single core)
## Use parallel = TRUE to speed-up....
system.time(best <- gamBiCopSelect(U$data, smooth.covs = X))
print(best$res)
EDF(best$res) ## The first function is linear
## Plot only the smooth component
par(mfrow = c(2, 2))
plot(best$res)
# }