CDKN

CDKNgenes

CDKNmap

CDKNlocus

These data are adapted from the DGI study on CDKN2A/CDKN2B region.

datasets

Datasets associated with the 'gap' package. Currently,
it includes an example data for regional association
plot (CDKN), an example data for a genomewide association
meta-analysis (OPG), data in studies of Parkinson's diease (PD),
ALHD2 markers and alcoholism (aldh2), APOE/APOC1 markers
and Schizophrenia (apoeapoc), cystic fibrosis (cf), a
Olink/INF panel (inf1), Manhattan plots with (hr1420, mhtdata)
and without (w4) gene annotations.

Jing Zhao

gap.datasets

Datasets for 'gap'

Jing Hua Zhao

Swetlana Herbrandt

CDKN function

There are three data objects in the dataset: <code>CDKNgenes</code>, the gene list from the Chromosome 9
according to UCSC browser (<a href="https://genome.ucsc.edu/">https://genome.ucsc.edu/</a>); <code>CDKNmap</code>, the genetic map as from
the HapMap website (<a href="https://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/rates/">https://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/rates/</a>);
<code>CDKNlocus</code>, the results from the association analysis of the locus based on DGI data.

Format

An example data for regional association plot — CDKN

There are three data objects in the dataset: <code>CDKNgenes</code>, the gene list from the Chromosome 9
according to UCSC browser (<a href='https://genome.ucsc.edu/'>https://genome.ucsc.edu/</a>); <code>CDKNmap</code>, the genetic map as from
the HapMap website (<a href='https://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/rates/'>https://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/rates/</a>);
<code>CDKNlocus</code>, the results from the association analysis of the locus based on DGI data.

CDKN: An example data for regional association plot

Description

Usage

Arguments

Format

References

Examples