This data is used to illustrate cis/trans classification, containg the following columns:
prot Chr SNP bp refA freq b se
1 4E.BP1 19 chr19:54327313_A_C 54327313 A 0.20550900 0.4510040 0.0243056
2 4E.BP1 19 chr19:54329063_G_T 54329063 T 0.10023500 -0.3233240 0.0333274
3 ADA 19 chr19:54327313_A_C 54327313 A 0.20550900 0.3542660 0.0246266
4 ADA 20 chr20:37456819_C_T 37456819 T 0.00388582 -0.2473080 0.1749800
5 ADA 20 chr20:38196991_G_T 38196991 G 0.00236927 -0.0171435 0.2238980
6 ADA 20 chr20:38603207_A_G 38603207 A 0.17074600 -0.0269075 0.0271976
p n freq_geno bJ bJ_se pJ LD_r
1 2.48545e-74 6483.69 0.20079500 0.426476 0.0251676 2.07907e-64 -0.13397800
2 4.69307e-22 6480.60 0.08846920 -0.246444 0.0338712 3.44090e-13 0.00000000
3 5.47833e-46 6441.97 0.20079500 0.354266 0.0250171 1.59869e-45 0.00000000
4 1.57618e-01 5553.51 0.00497018 -5.873090 0.2241210 2.32892e-151 -0.00633091
5 9.38970e-01 5556.57 0.00198807 -13.473100 0.3790980 1.18609e-276 0.02467370
6 3.22550e-01 6285.16 0.15009900 -0.299797 0.0278787 5.69806e-27 0.11116200
UniProtID
1 Q13541
2 Q13541
3 P00813
4 P00813
5 P00813
6 P00813
data(jma.cojo)A data frame containing 445 rows and 16 columns