gap (version 1.6)

plot.hap.score: Plot haplotype frequencies versus haplotype score statistics

Description

Method function to plot a class of type hap.score

Usage

# S3 method for hap.score
plot(x, ...)

Value

Nothing is returned.

This is a plot method function used to plot haplotype frequencies on the x-axis and haplotype-specific scores on the y-axis. Because hap.score is a class, the generic plot function can be used, which in turn calls this plot.hap.score function.

Arguments

x

The object returned from hap.score (which has class hap.score).

...

Optional arguments.

References

Schaid DJ, Rowland CM, Tines DE, Jacobson RM, Poland GA (2002) Score tests for association of traits with haplotypes when linkage phase is ambiguous. Amer J Hum Genet 70:425-34

See Also

hap.score

Examples

if (FALSE) {
save <- hap.score(y, geno, trait.type = "gaussian")

# Example illustrating generic plot function:
plot(save)

# Example illustrating specific method plot function:
plot.hap.score(save)
}