as.gapdata

This function generates a gapdata class object. This object is used for drawing dendrograms and heatmaps.

internal

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

as.gapdata function

<dl><dt>d</dt>
<dd>dendrogram class object</dd>
<dt>segments</dt>
<dd>a data.frame containing segments information</dd>
<dt>labels</dt>
<dd>a data.frame containing labels information</dd>
<dt>...</dt>
<dd>ignored</dd></dl>

Arguments

Make a gapdata class object — as.gapdata

<dl>

<dt>d</dt>
<dd>dendrogram class object</dd>


<dt>segments</dt>
<dd>a data.frame containing segments information</dd>


<dt>labels</dt>
<dd>a data.frame containing labels information</dd>


<dt>...</dt>
<dd>ignored</dd>

</dl>

as.gapdata: Make a gapdata class object

Description

Usage

Value

Arguments