assign_positions

This function reevaluate the position of leaves based on the gaps calculated.

internal

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

assign_positions function

<dl><dt>d</dt>
<dd>dendrogram class object</dd>
<dt>runningX</dt>
<dd>numerical position of leaf node on display</dd>
<dt>verbose</dt>
<dd>logical for whether in verbose mode or not</dd>
<dt>...</dt>
<dd>ignored</dd></dl>

Arguments

Re-evaluate the position of leaves — assign_positions

<dl>

<dt>d</dt>
<dd>dendrogram class object</dd>


<dt>runningX</dt>
<dd>numerical position of leaf node on display</dd>


<dt>verbose</dt>
<dd>logical for whether in verbose mode or not</dd>


<dt>...</dt>
<dd>ignored</dd>

</dl>

assign_positions: Re-evaluate the position of leaves

Description

Usage

Value

Arguments