count_gap

This function counts the number of gaps based on the cutting the tree method.
It counts the number of branches that are above the threshold distance.

internal

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

count_gap function

<dl><dt>d</dt>
<dd>dendrogram class object</dd>
<dt>count</dt>
<dd>count</dd>
<dt>threshold</dt>
<dd>a numeric value for threshold</dd></dl>

Arguments

Count the number of gaps based on a threshold — count_gap

<dl>

<dt>d</dt>
<dd>dendrogram class object</dd>


<dt>count</dt>
<dd>count</dd>


<dt>threshold</dt>
<dd>a numeric value for threshold</dd>

</dl>

count_gap: Count the number of gaps based on a threshold

Description

Usage

Value

Arguments