extract_list

This function extract list of data.frames for drawing dendrograms

internal

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

extract_list function

<dl><dt>d</dt>
<dd>dendrogram class object</dd>
<dt>type</dt>
<dd>either "triangular" or "rectangular". It determines the same of branches.</dd>
<dt>segments_df</dt>
<dd>data.frame storing the segment information</dd>
<dt>labels_df</dt>
<dd>data.frame storking the label positions</dd>
<dt>...</dt>
<dd>ignored</dd></dl>

Arguments

Extract a list from the dendrogram object — extract_list

<dl>

<dt>d</dt>
<dd>dendrogram class object</dd>


<dt>type</dt>
<dd>either "triangular" or "rectangular". It determines the same of branches.</dd>


<dt>segments_df</dt>
<dd>data.frame storing the segment information</dd>


<dt>labels_df</dt>
<dd>data.frame storking the label positions</dd>


<dt>...</dt>
<dd>ignored</dd>

</dl>

extract_list: Extract a list from the dendrogram object

Description

Usage

Value

Arguments