gap_dendrogram

This function draws a gapped dendrogram using the ggplot2 package. The input for the
function is the gapdata class object, generated from gap_data() function.

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

gap_dendrogram function

<dl><dt>data</dt>
<dd>gapdata class object</dd>
<dt>leaf_labels</dt>
<dd>a logical to show labels or not</dd>
<dt>rotate_label</dt>
<dd>a logical to rotate labels or not</dd>
<dt>orientation</dt>
<dd>a character to set the orientation of dendrogram. Choices are "top", "right", "bottom", "left".</dd>
<dt>...</dt>
<dd>ignored</dd></dl>

Arguments

Function to draw a gapped dendrogram — gap_dendrogram

<dl>

<dt>data</dt>
<dd>gapdata class object</dd>


<dt>leaf_labels</dt>
<dd>a logical to show labels or not</dd>


<dt>rotate_label</dt>
<dd>a logical to rotate labels or not</dd>


<dt>orientation</dt>
<dd>a character to set the orientation of dendrogram. Choices are "top", "right", "bottom", "left".</dd>


<dt>...</dt>
<dd>ignored</dd>

</dl>

gap_dendrogram: Function to draw a gapped dendrogram

Description

Usage

Value

Arguments