gap_heatmap

This function draws a gapped heatmap using the ggplot2 package. The input for the
function are the gapdata class objects, generated from gap_data() function, and the data matrix.

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Evan Biederstedt

gapmap

Drawing Gapped Cluster Heatmaps with 'ggplot2'

Ryo Sakai

gap_heatmap function

<dl><dt>m</dt>
<dd>data matrix</dd>
<dt>row_gap</dt>
<dd>a gapdata class object for rows</dd>
<dt>col_gap</dt>
<dd>a gapdata class object for columns</dd>
<dt>row_labels</dt>
<dd>a logical to show labels for rows</dd>
<dt>col_labels</dt>
<dd>a logical to show lables for columns</dd>
<dt>rotate</dt>
<dd>a logical to rotate row labels</dd>
<dt>col</dt>
<dd>colors used for heatmap</dd></dl>

Arguments

Function to draw a gapped heatmap — gap_heatmap

<dl>

<dt>m</dt>
<dd>data matrix</dd>


<dt>row_gap</dt>
<dd>a gapdata class object for rows</dd>


<dt>col_gap</dt>
<dd>a gapdata class object for columns</dd>


<dt>row_labels</dt>
<dd>a logical to show labels for rows</dd>


<dt>col_labels</dt>
<dd>a logical to show lables for columns</dd>


<dt>rotate</dt>
<dd>a logical to rotate row labels</dd>


<dt>col</dt>
<dd>colors used for heatmap</dd>

</dl>

gap_heatmap: Function to draw a gapped heatmap

Description

Usage

Value

Arguments