geNetClassifier (version 1.12.0)

leukemiasClassifier: Sample leukemias classifier

Description

A sample of the object returned by geNetClassifier. Containins the classifier, the network, and the gene statistics.

Usage

data(leukemiasClassifier)

Format

GeNetClassifierReturn object

Examples

data(leukemiasClassifier)
# Global view of the object and its structure:
leukemiasClassifier
names(leukemiasClassifier)

# Call and acess to the classifier:
leukemiasClassifier@call
leukemiasClassifier@classifier

# Genes used for training the classifier:
numGenes(leukemiasClassifier@classificationGenes)
leukemiasClassifier@classificationGenes
genesDetails(leukemiasClassifier@classificationGenes)

# Generalization Error estimated by cross-validation:
# 	leukemiasClassifier@generalizationError
#	overview(leukemiasClassifier@generalizationError)
	
# List of Networks by classes:
leukemiasClassifier@genesNetwork

# Access to the nodes or edges of each network:
getEdges(leukemiasClassifier@genesNetwork$AML)[1:5,]
getNodes(leukemiasClassifier@genesNetwork$AML)[1:50]	
		
# Global genes ranking:
leukemiasClassifier@genesRanking
numGenes(leukemiasClassifier@genesRanking)
numSignificantGenes(leukemiasClassifier@genesRanking)
# getTopRanking(leukemiasClassifier@genesRanking, 10)