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geiger (version 0.2-5)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

4,050

Version

0.2-5

License

GPL version 2 or greater

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (0.2-5)

name.check

Compares taxa in data and tree
ic.sigma

Estimate Evolutionary VCV Matrix
ape2ouch

Convert between ape and ouch formats
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree
phy.anova

Phylogenetic ANOVA and MANOVA
area.between.curves

Area between two curves
geiger-package

GEIGER
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities
delta.tree

Tree transformations
disp.calc

Calculate disparity
BDsim

Birth-death population simulator
rc

Relative cladogenesis test
fit.continuous

Model fitting for continuous data
geospiza

Data from Darwin's finches
tip.disparity

Tip disparity calculation
likelihood.discrete

Likelihood for discrete character evolution
dtt

Disparity-through-time
fit.discrete

Model fitting for discrete comparative data
sim.char

Simulate character evolution
birthdeath.tree

Birth-death tree simulator