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geiger (version 0.2-6)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

3,246

Version

0.2-6

License

GPL version 2 or greater

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (0.2-6)

birthdeath.tree

Birth-death tree simulator
ape2ouch

Convert between ape and ouch formats
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities
phy.anova

Phylogenetic ANOVA and MANOVA
name.check

Compares taxa in data and tree
ic.sigma

Estimate Evolutionary VCV Matrix
geospiza

Data from Darwin's finches
fit.continuous

Model fitting for continuous data
dtt

Disparity-through-time
likelihood.discrete

Likelihood for discrete character evolution
sim.char

Simulate character evolution
BDsim

Birth-death population simulator
fit.discrete

Model fitting for discrete comparative data
tip.disparity

Tip disparity calculation
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree
rc

Relative cladogenesis test
geiger-package

GEIGER
disp.calc

Calculate disparity
area.between.curves

Area between two curves
delta.tree

Tree transformations