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geiger (version 1.3-1)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

3,510

Version

1.3-1

License

GPL (>= 2)

Maintainer

Luke Harmon

Last Published

October 20th, 2009

Functions in geiger (1.3-1)

fitDiscrete

Model fitting for discrete comparative data
ic.sigma

Estimate Evolutionary VCV Matrix
geospiza

Data from Darwin's finches
birthdeath.tree

Birth-death tree simulator
phy.anova

Phylogenetic ANOVA and MANOVA
runMedusa

MEDUSA: Modeling evolutionary diversification using stepwise AIC
deltaTree

Tree transformations
name.check

Compares taxa in data and tree
node.leaves

Returns all descendents of a given node in your tree
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree
geiger-package

GEIGER
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities
tip.disparity

Tip disparity calculation
rc

Relative cladogenesis test
fitContinuous

Model fitting for continuous data
dtt

Disparity-through-time
getAncStates

Estimate ancestral character states for continuous characters
BDsim

Birth-death population simulator
sim.char

Simulate character evolution
area.between.curves

Area between two curves