treedata

matching species found in a comparative dataset

manip

data

graphs

Methods for fitting macroevolutionary models to phylogenetic trees
Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

Luke Harmon

geiger

Analysis of Evolutionary Diversification

treedata function

<dl> <dt>phy</dt>
<dd>a phylogenetic tree of class 'phylo'</dd> <dt>data</dt>
<dd>a named vector or matrix of continuous trait values, for species in <code>phy</code></dd> <dt>sort</dt>
<dd>whether to sort the <code>data</code> based on names found in <code>phy</code></dd> <dt>warnings</dt>
<dd>whether to report warnings of mismatched taxa between <code>phy</code> and <code>data</code></dd></dl>

Arguments

Author

compare taxa in data and tree — treedata

<dl>

 <dt>phy</dt>
<dd>a phylogenetic tree of class 'phylo'</dd>

 <dt>data</dt>
<dd>a named vector or matrix of continuous trait values, for species in <code>phy</code></dd>

 <dt>sort</dt>
<dd>whether to sort the <code>data</code> based on names found in <code>phy</code></dd>

 <dt>warnings</dt>
<dd>whether to report warnings of mismatched taxa between <code>phy</code> and <code>data</code></dd>

</dl>

treedata: compare taxa in data and tree

Description

Usage

Value

Arguments

Author

Details

Examples