tb.flow.des

A flow design file dataset for cynomolgus macaques infected with M.
tuberculosis. Contains sample information such as time point and clinical
status.

datasets

A set of functions to generate and format results from statistical
analyses of a wide range of high throughput experiments that can then
be uploaded into the 'BART' (Bio-Statistical Analysis Reporting Tool) 'shiny'
app <https://github.com/jcardenas14/BART>. The app provides users with tools
to visualize and efficiently sift through large amounts of data and results.

Jacob Cardenas

genBart

Generate 'BART' File

Jacob Turner

Derek Blankenship

tb.flow.des function

A data frame with 213 rows of samples and 7 variables.<dl class="dl-horizontal">
 <dt>columnname</dt><dd>names matching column names in expression dataset</dd> 
 <dt>monkey_id</dt><dd>id assigned to annotate each monkey</dd> 
 <dt>timepoint</dt><dd>times at which samples were drawn, in days</dd> 
 <dt>timerange</dt><dd>groups time points into stages</dd> <dt>sample_id</dt><dd>id 
 assigned to annotate each sample</dd> <dt>clinical_status</dt><dd>denotes if disease
 is active or latent</dd> </dl>

Format

Flow design file — tb.flow.des

A data frame with 213 rows of samples and 7 variables.<dl class='dl-horizontal'>
 <dt>columnname</dt><dd>names matching column names in expression dataset</dd> 
 <dt>monkey_id</dt><dd>id assigned to annotate each monkey</dd> 
 <dt>timepoint</dt><dd>times at which samples were drawn, in days</dd> 
 <dt>timerange</dt><dd>groups time points into stages</dd> <dt>sample_id</dt><dd>id 
 assigned to annotate each sample</dd> <dt>clinical_status</dt><dd>denotes if disease
 is active or latent</dd> </dl>

tb.flow.des: Flow design file

Description

Usage

Arguments

Format