identify_clump.clumpingResult

Identify clump number in <code>clumpingResult</code> class plot

Genome-wide association study (GWAS) performed with SLOPE,
short for Sorted L-One Penalized Estimation, a
method for estimating the vector of coefficients in a linear model.
In the first step of GWAS, single nucleotide polymorphisms (SNPs) are
clumped according to their correlations and distances.
Then, SLOPE is performed on the data where each clump has
one representative.
Malgorzata Bogdan, Ewout van den Berg, Chiara Sabatti, Weijie Su
and Emmanuel Candes (2014)
"SLOPE - Adaptive Variable Selection via Convex Optimization"
<arXiv:1407.3824>.

Piotr Sobczyk

geneSLOPE

Genome-Wide Association Study with SLOPE

Damian Brzyski

Christine Peterson

Emmanuel J. Candes

Malgorzata Bogdan

Chiara Sabatti

identify_clump.clumpingResult function

<dl><dt>x</dt>
<dd><code>clumpingResult</code> class object</dd>
<dt>...</dt>
<dd>Further arguments to be passed to or from other methods. They are ignored in this function.</dd></dl>

Arguments

Identify clump number in clumpingResult class plot — identify_clump.clumpingResult

<dl>

<dt>x</dt>
<dd><code>clumpingResult</code> class object</dd>


<dt>...</dt>
<dd>Further arguments to be passed to or from other methods. They are ignored in this function.</dd>

</dl>

identify_clump.clumpingResult: Identify clump number in `clumpingResult` class plot

Description

Usage

Value

Arguments