A result of procedure for snp clumping produced by screen_snps
Always a named list of eight elements
X
numeric matrix, consists of snps that passed screening
y
numeric vector, phenotype
X_info
data.frame, SNP info from .map file
pVals
numeric vector, p-values from marginal tests for each snp
numberOfSnps
numeric, total number of SNPs in .raw file
selectedSnpsNumbers
numeric vector, which rows of X_info
data.frame are related to snps that passed screening
pValMax
numeric, p-value used in screening procedure
phenotypeInfo
data.frame, additional information about observations
provied in phenotypeData
object
phenotypeData
screen_snps