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genomation (version 1.4.2)

orderBy: Reorder all elements of a ScoreMatrixList to a given ordering vector

Description

Reorder all elements of a ScoreMatrixList to a given ordering vector

Usage

orderBy(sml, ord.vec)

## S3 method for class 'ScoreMatrixList': orderBy(sml, ord.vec)

Arguments

sml
ScoreMatrixList object
ord.vec
an integer vector

Value

  • ScoreMatrixList object

Examples

Run this code
library(GenomicRanges)
data(cage)
data(cpgi)
data(promoters)

cage$tpm = NULL
targets = GRangesList(cage=cage, cpgi=cpgi)
sml = ScoreMatrixList(targets, promoters, bin.num=10)
kmeans.clust = kmeans(sml$cage,3)

sml.ordered = orderBy(sml, kmeans.clust$cluster)
multiHeatMatrix(sml.ordered)

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