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genomeIntervals (version 1.28.0)
Operations on genomic intervals
Description
This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.
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Version
Version
1.28.0
1.26.0
1.24.1
1.22.3
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Version
1.28.0
License
Artistic-2.0
Maintainer
Julien Gagneur
Last Published
July 15th, 2015
Functions in genomeIntervals (1.28.0)
Search functions
interval_union
Genome interval set operations
getGffAttribute
Pull one or more key/value pairs from gffAttributes strings
genomeIntervals-package
Operations on genomic intervals
gen_ints
Genome Intervals examples
readGff3,character-method
readGff3
c
c extension for the
genomeIntervals package
distance_to_nearest
Distance in bases to the closest interval(s)
GenomeIntervals
Constructor function for genomeIntervals objects
Genome_intervals-class
Class "Genome\_intervals"
interval_overlap
Assess overlap from one set of genomic intervals to another
Genome_intervals_stranded-class
Class "Genome\_intervals\_stranded"
Genome_intervals-ordering
Ordering methods for Genome intervals
genomeIntervals coercion methods
Coercion methods of the genomeIntervals package
Genome_intervals deprecated functions
The following function have been deprecated:
seq_name
seq_name<-
parseGffAttributes
Parse out the gffAttributes column of a Genome\_intervals object
core_annotated
Genome intervals with minimal annotation