genomes (version 2.16.0)

ncbiProject: NCBI BioProject database

Description

Search the Entrez BioProject (Genome Project) at NCBI and retrieve a project summary table

Usage

ncbiProject(term, refseq = FALSE)

Arguments

term

any valid combination of Entrez search terms

refseq

include RefSeq and Overview projects, if false then only primary submissions excluding RefSeq.

Value

Details

Searches the new BioProject database using the ESearch utility

References

A description of the Entrez programming utilities is at http://eutils.ncbi.nlm.nih.gov/.

See Also

ncbiGenome

Examples

## Not run: 
# x <- ncbiProject("Yersinia[ORGN]")
# x
# summary(x)
# 
# #Metagenomes  
# metag <- ncbiProject("metagenome[Project Data Type]")
# metag2 <- ncbiProject("metagenomes[Orgn]")
# ## End(Not run)