genomes (version 2.16.0)

read.glimmer: Read a Glimmer output file

Description

Read a Glimmer3 gene output file from NCBI

Usage

read.glimmer(file)

Arguments

file

Glimmer3 file

Value

Details

Glimmer files are available from the NCBI genomes ftp directory, ftp://ftp.ncbi.nih.gov/genomes.

References

Details about Glimmer3 are available at http://www.cbcb.umd.edu/software/glimmer

See Also

read.ncbi.ftp

Examples

 file<-"ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.Glimmer3" 
 x <-read.glimmer(file)
 x
 metadata(x)
 table(values(x)$frame)