genotypeeval (version 1.2.2)

GoldDataFromGRanges: User Constructor for class. Used to associate the gold params object with the gold granges and to check if MAF is present.

Description

User Constructor for class. Used to associate the gold params object with the gold granges and to check if MAF is present.

Usage

GoldDataFromGRanges(genome, gold.granges, goldparams)

Arguments

genome

Genome build, GRCh37 or GRCh38

gold.granges

Gold file as GRanges

goldparams

GoldDataParam object setting thresholds for evaluation

Value

• Object of class GoldData

Examples

gparam <-  GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
gr <- GRanges(seqnames="22", IRanges(1e7,5e7))
gold <- GoldDataFromGRanges("GRCh38", gr, gparam)