genotypeeval (version 1.2.2)

ReadGoldData: User Constructor for class

Description

User Constructor for class

Usage

ReadGoldData(genome, vcffilename, goldparams)

Arguments

genome

Genome build, GRCh37 or GRCh38

vcffilename

path and filename of vcf file

goldparams

GoldDataParam object setting thresholds for evaluation

Value

• Object of class GoldData

Examples

gparam <-  GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
g1000fn <- system.file("ext-data", "example_gold_file.vcf", package="genotypeeval")
g1000 <- ReadGoldData("GRCh38", g1000fn, gparam)