genotypeeval (version 1.2.2)

VCFQAReport-class: Declare class VCFQAReport which will evaluate a VCF stored as a ReadData object.

Description

Declare class VCFQAReport which will evaluate a VCF stored as a ReadData object.

Arguments

printnames

List of tests applied to VCF

results

Numeric vector of metrics calculated from VCF file

plots

List of plots created from VCF File

tests

TRUE (passed) or FALSE (failed) logical vector of whether VCF passed metrics using thresholds from VCFQAParam

fn

Filename of VCF evaluated (for plot titles)