chunkData: chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Description
chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Usage
chunkData(myfn, genome, svp, admixture.ref)
Arguments
myfn
Filename/path of file
genome
GRCh37 or GRCh38
svp
Params specified for readVCFAsVRanges
admixture.ref
VRanges with MAF for superpopulations (EAS, AFR, EUR)