genotypeeval (version 1.2.2)

goldCompare: Comparator to gold standard

Description

Comparator to gold standard

Usage

goldCompare(x, gr, coding, limits.c, limits.uc, percent.c, name.of.gold)

Arguments

x

myvcf of interest

gr

gold GRanges

coding

Coding GRanges

limits.c

all confirmed limits

limits.uc

all unconfirmed limits

percent.c

percent confirmed limit

name.of.gold

user readable name

Value

• list with name, logical vector (passed or not), numeric vector of transition transversion in coding and non coding regions in confirmed and non confirmed