genotypeeval (version 1.2.2)

hetsMasked: Number hets in masked GRanges

Description

Number hets in masked GRanges

Usage

hetsMasked(x, masked.limits, non.masked.limits, masked)

Arguments

x

myvcf of interest

masked.limits

Limits for self chain region (lower and upper)

non.masked.limits

Limits for non self chain region (lower and upper)

masked

GRanges of difficult regions (repeat masked, paralogs, self chain, etc)

Value

• list with name, logical vector (passed or not), numeric vector number hets in masked region and not in masked region