genotypeeval (version 1.2.2)

rareCompare: Comparator to rare variants. Rare is defined as 0.01 percent or less

Description

Comparator to rare variants. Rare is defined as 0.01 percent or less

Usage

rareCompare(x, gr, percent.h)

Arguments

x

myvcf of interest

gr

GRanges of gold comparator

percent.h

what percent higher hets than hom_alt?

Value

• list with name, logical (passed or not), numeric (proportion hets in rare)