genotypeeval (version 1.2.2)

titv: Transition transversion ratio in coding and non-coding

Description

Transition transversion ratio in coding and non-coding

Usage

titv(x, coding, ll.nc, ul.nc, ll.c, ul.c)

Arguments

x

myvcf of interest

coding

GRanges of coding regions

ll.nc

lower limit to pass for transition transversion in noncoding

ul.nc

upper limit to pass for transition transversion in noncoding

ll.c

lower limit to pass for transition transversion in coding

ul.c

upper limit to pass for transition transversion in coding

Value

• list with name, logical vector (passed or not), numeric vector of transition transversion ratio in coding and non coding regions