if (FALSE) {
# Two dimensional data
data(plethodon)
Y.gpa <- gpagen(plethodon$land) #GPA-alignment
ref <- mshape(Y.gpa$coords)
plotRefToTarget(ref, Y.gpa$coords[,,39])
plotRefToTarget(ref, Y.gpa$coords[,,39], mag = 2, outline = plethodon$outline)
#magnify by 2X
plotRefToTarget(ref, Y.gpa$coords[,,39], method = "vector", mag = 3)
plotRefToTarget(ref, Y.gpa$coords[,,39], method = "points",
outline = plethodon$outline)
plotRefToTarget(ref, Y.gpa$coords[,,39], method = "vector",
outline = plethodon$outline, mag = 2.5)
plotRefToTarget(ref, Y.gpa$coords[,,39],
gridPars = gridPar(pt.bg = "green", pt.size = 1),
method = "vector", mag = 3)
# Three dimensional data
data(scallops)
Y.gpa <- gpagen(A = scallops$coorddata, curves = scallops$curvslide,
surfaces = scallops$surfslide)
ref <- mshape(Y.gpa$coords)
plotRefToTarget(ref, Y.gpa$coords[,,1], method = "points")
scallinks <- matrix(c(1,rep(2:16, each=2),1), nrow = 16, byrow = TRUE)
plotRefToTarget(ref, Y.gpa$coords[,,1],
gridPars = gridPar(tar.pt.bg = "blue", tar.link.col="blue",
tar.link.lwd = 2), method = "points", links = scallinks)
}
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