fortify_matrix.list_upset

fortify_matrix.list

<a href="https://lifecycle.r-lib.org/articles/stages.html#experimental"><img src="figures/lifecycle-experimental.svg?package=ggalign&version=1.0.1" alt="[Experimental]"></a>
This function converts a list into a matrix format suitable for creating an
UpSet plot. It always returns a matrix for a <code>horizontal</code> UpSet plot.

A 'ggplot2' extension offers various tools the creation of complex,
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layout, 'ggalign' delivers flexibility and accuracy with minimal effort.

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A 'ggplot2' Extension for Consistent Axis Alignment

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Guangchuang Yu

fortify_matrix.list_upset function

<dl><dt>data</dt>
<dd>A list of sets.</dd>
<dt>mode</dt>
<dd>A string of <code>"distinct"</code>, <code>"intersect"</code>, or <code>"union"</code>
indicates the mode to define the set intersections. Check
<a href="https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#upset-mode">https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#upset-mode</a>
for details.</dd>
<dt>...</dt>
<dd>These dots are for future extensions and must be empty.</dd>
<dt>data_arg</dt>
<dd>The argument name for <code>data</code>. Developers can use it to
improve messages. Not used by the user.</dd>
<dt>call</dt>
<dd>The execution environment where <code>data</code> and other arguments for
the method are collected. Developers can use it to improve messages. Not
used by the user.</dd></dl>

Arguments

<ul>
<li><code>intersection_sizes</code>: An integer vector indicating the size of each
intersection.</li>
<li><code>set_sizes</code>: An integer vector indicating the size of each set.</li>
</ul>

ggalign attributes

<a href='https://lifecycle.r-lib.org/articles/stages.html#experimental'><img src='figures/lifecycle-experimental.svg' alt='[Experimental]' /></a>
This function converts a list into a matrix format suitable for creating an
UpSet plot. It always returns a matrix for a <code>horizontal</code> UpSet plot.

Build a Matrix for UpSet plot — fortify_matrix.list_upset

<dl>

<dt>data</dt>
<dd>A list of sets.</dd>


<dt>mode</dt>
<dd>A string of <code>"distinct"</code>, <code>"intersect"</code>, or <code>"union"</code>
indicates the mode to define the set intersections. Check
<a href='https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#upset-mode'>https://jokergoo.github.io/ComplexHeatmap-reference/book/upset-plot.html#upset-mode</a>
for details.</dd>


<dt>...</dt>
<dd>These dots are for future extensions and must be empty.</dd>


<dt>data_arg</dt>
<dd>The argument name for <code>data</code>. Developers can use it to
improve messages. Not used by the user.</dd>


<dt>call</dt>
<dd>The execution environment where <code>data</code> and other arguments for
the method are collected. Developers can use it to improve messages. Not
used by the user.</dd>

</dl>

<ul>
<li><code>intersection_sizes</code>: An integer vector indicating the size of each
intersection.</li>
<li><code>set_sizes</code>: An integer vector indicating the size of each set.</li>
</ul>

fortify_matrix.list_upset: Build a Matrix for UpSet plot

Description

Usage

Arguments

ggalign attributes

See Also