fortify_matrix.matrix

A 'ggplot2' extension offers various tools the creation of complex,
multi-plot visualizations. Built on the familiar grammar of graphics, it
provides intuitive tools to align and organize plots, making it ideal for
complex visualizations. It excels in multi-omics research—such as genomics
and microbiomes—by simplifying the visualization of intricate relationships
between datasets, for example, linking genes to pathways. Whether you need
to stack plots, arrange them around a central figure, or create a circular
layout, 'ggalign' delivers flexibility and accuracy with minimal effort.

Yun Peng

ggalign

A 'ggplot2' Extension for Consistent Axis Alignment

Shixiang Wang

Guangchuang Yu

fortify_matrix.matrix function

<dl><dt>data</dt>
<dd>A matrix object.</dd>
<dt>...</dt>
<dd>These dots are for future extensions and must be empty.</dd>
<dt>data_arg</dt>
<dd>The argument name for <code>data</code>. Developers can use it to
improve messages. Not used by the user.</dd>
<dt>call</dt>
<dd>The execution environment where <code>data</code> and other arguments for
the method are collected. Developers can use it to improve messages. Not
used by the user.</dd></dl>

Arguments

<ul>
<li><code>upset</code>: <code>fortify_matrix.matrix_upset()</code></li>
<li><code>oncoplot</code>: <code>fortify_matrix.matrix_oncoplot()</code></li>
</ul>

shape

Build a matrix — fortify_matrix.matrix

<dl>

<dt>data</dt>
<dd>A matrix object.</dd>


<dt>...</dt>
<dd>These dots are for future extensions and must be empty.</dd>


<dt>data_arg</dt>
<dd>The argument name for <code>data</code>. Developers can use it to
improve messages. Not used by the user.</dd>


<dt>call</dt>
<dd>The execution environment where <code>data</code> and other arguments for
the method are collected. Developers can use it to improve messages. Not
used by the user.</dd>

</dl>

<ul>
<li><code>upset</code>: <code>fortify_matrix.matrix_upset()</code></li>
<li><code>oncoplot</code>: <code>fortify_matrix.matrix_oncoplot()</code></li>
</ul>

fortify_matrix.matrix: Build a matrix

Description

Usage

Arguments

shape

See Also