gggenomes (version 1.0.1)

emale_genes: Gene annotations if 6 EMALE genomes (endogenous virophages)

Description

A data set containing gene feature annotations for 6 endogenous virophages found in the genomes of the marine protist Cafeteria burkhardae.

Usage

emale_genes

Format

A data frame with 143 rows and 17 columns

file_id

name of the file the data was read from

seq_id

identifier of the sequence the feature appears on

start

start of the feature on the sequence

end

end of the feature on the sequence

strand

reading orientation relative to sequence (+ or -)

type

feature type (CDS, mRNA, gene, ...)

feat_id

unique identifier of the feature

introns

a list column with internal intron start/end positions

parent_ids

a list column with parent IDs - feat_id's of parent features

source

source of the annotation

score

score of the annotation

phase

For "CDS" features indicates where the next codon begins relative to the 5' start

width

width of the feature

gc_content

relative GC-content of the feature

name

name of the feature

Note

geom_id

an identifier telling the which features should be plotted as on items (usually CDS and mRNA of same gene)