emale_prot_ava

One row per alignment. Alignments were computed with mmseqs2 (blast-like).

datasets

An extension of 'ggplot2' for creating complex genomic
maps. It builds on the power of 'ggplot2' and 'tidyverse' adding new 'ggplot2'-style
geoms & positions and 'dplyr'-style verbs to manipulate the underlying data. It
implements a layout concept inspired by 'ggraph' and introduces tracks to bring
tidiness to the mess that is genomics data.

Thomas Hackl

gggenomes

A Grammar of Graphics for Comparative Genomics

Markus J. Ankenbrand

Bart van Adrichem

Kristina Haslinger

emale_prot_ava function

A data frame with 827 rows and 13 columns<dl>
<dt>file_id</dt>
<dd>name of the file the data was read from</dd><dt>feat_id</dt>
<dd>identifier of the first feature in the alignment</dd><dt>feat_id2</dt>
<dd>identifier of the second feature in the alignment</dd><dt>pident, length, mismatch, gapopen, start, end, start2, end2, evalue, bitscore</dt>
<dd>see <a href="https://github.com/seqan/lambda/wiki/BLAST-Output-Formats">https://github.com/seqan/lambda/wiki/BLAST-Output-Formats</a> for BLAST-tabular format columns</dd>
</dl>

Format

All-versus-all alignments 6 EMALE proteomes — emale_prot_ava

A data frame with 827 rows and 13 columns<dl>
<dt>file_id</dt>
<dd>name of the file the data was read from</dd>

<dt>feat_id</dt>
<dd>identifier of the first feature in the alignment</dd>

<dt>feat_id2</dt>
<dd>identifier of the second feature in the alignment</dd>

<dt>pident, length, mismatch, gapopen, start, end, start2, end2, evalue, bitscore</dt>
<dd>see <a href='https://github.com/seqan/lambda/wiki/BLAST-Output-Formats'>https://github.com/seqan/lambda/wiki/BLAST-Output-Formats</a> for BLAST-tabular format columns</dd>


</dl>

emale_prot_ava: All-versus-all alignments 6 EMALE proteomes

Description

Usage

Arguments

Format